SNOMED CT Concept  138875005

Clinical finding  404684003

Procedure related finding  127325009

Evaluation finding  441742003

Presence of organism - finding   365690003

SNOMED CT code


SNOMED code365690003
namePresence of organism - finding
statusactive
date introduced2002-01-31
fully specified name(s)Finding of presence of organism (finding)
synonyms
  • Finding of presence of organism
  • Presence of organism - finding
  • Presence of organism
attributes - group1
InterpretsMicrobiology procedure   19851009
parentsEvaluation finding   441742003
children
  • Abiotrophia species or Granulicatella species   710322003
  • Achromobacter denitrificans or Achromobacter xylosoxidans   33321000087106
  • Acinetobacter alcaligenes or Acinetobacter lwoffii   717196000
  • Acinetobacter anitratus or Acinetobacter haemolyticus   717194002
  • Acinetobacter baumannii or Acinetobacter calcoaceticus or Acinetobacter pittii   785861005
  • Acinetobacter baumannii or Acinetobacter haemolyticus   717195001
  • Acinetobacter baumannii or Acinetobacter nosocomialis group   782187000
  • Acinetobacter bereziniae or Acinetobacter guillouiae   710328004
  • Acinetobacter calcoaceticus or Acinetobacter haemolyticus   703058005
  • Acinetobacter junii or Acinetobacter johnsonii   710330002
  • Acinetobacter lwoffii or Acinetobacter junii   710324002
  • Actinobacillus equuli or Actinobacillus suis   34651000087109
  • Actinobacillus lignieresii or Actinobacillus pleuropneumoniae   20481000112108
  • Actinomyces meyeri or Actinomyces odontolyticus   787888001
  • Actinomyces oris or Actinomyces viscosus   30721000112104
  • Actinotignum sanguinis or Actinotignum schaalii   51231000087102
  • Aeromonas caviae or Aeromonas hydrophila   717197009
  • Aeromonas hydrophila or Aeromonas punctata   703028004
  • Aeromonas salmonicida or Aeromonas bestiarum   34701000087104
  • Aeromonas salmonicida subsp. achromogenes or Aeromonas salmonicida subsp. masoucida   37831000087106
  • Aeromonas sobria or Aeromonas veronii   38461000087102
  • Agrobacterium radiobacter or Agrobacterium tumefaciens   702937009
  • Anaerococcus tetradius or Anaerococcus prevotii   703022003
  • Aspergillus calidoustus or Aspergillus ustus   34711000087102
  • Aspergillus ochraceus or Aspergillus westerdijkiae   34721000087105
  • Bacillus amyloliquefaciens or Bacillus atrophaeus or Bacillus subtilis   786843009
  • Bacillus cereus or Bacillus mycoides or Bacillus thuringiensis   786845002
  • Bacillus circulans or Paenibacillus glucanolyticus   787960006
  • Bacteroides buccae or Bacteroides oris   717198004
  • Bacteroides species or Prevotella species   710327009
  • Blastomyces dermatitidis or Blastomyces gilchristii   131000112104
  • Blastomyces dermatitidis or Blastomyces gilchristii   457661000124101  removed: 2022-09-01
  • Blastoschizomyces capitatus or Candida krusei or Prototheca zopfii   717199007
  • Brevibacillus agri or Brevibacillus brevis   786992004
  • Brevundimonas diminuta or Brevundimonas vesicularis   703038009
  • Brevundimonas diminuta or Oligella urethralis   703013004
  • Campylobacter jejuni or Campylobacter coli   703009006
  • Candida albicans or Candida dubliniensis   703061006
  • Candida firmetaria or Candida inconspicua   716258002
  • Candida inconspicua or Candida krusei   716256003
  • Candida inconspicua or Candida krusei or Candida lambica   717200005
  • Candida inconspicua or Candida lambica   712765008
  • Candida inconspicua or Candida norvegensis   703031003
  • Candida sake or Candida famata or Yarrowia lipolytica   703263004
  • Candida, not Candida albicans   404503003
  • Capnocytophaga canimorsus or Capnocytophaga cynodegmi   703056009
  • Cedecea species 3 or Cedecea species 5   703949001
  • Cellulomonas species or Microbacterium species   710326000
  • Centers for Disease Control and Prevention Group Vb-3 or Pseudomonas stutzeri   717218008
  • Chryseobacterium indologenes or Brevundimonas vesicularis   702992000
  • Chryseobacterium indologenes or Empedobacter brevis   703030002
  • Chryseomonas luteola or Pseudomonas oryzihabitans   703019000
  • Citrobacter amalonaticus or Citrobacter diversus   703948009  removed: 2020-07-31
  • Citrobacter amalonaticus or Citrobacter koseri   703033000
  • Citrobacter braakii or Citrobacter freundii or Citrobacter sedlakii   703035007
  • Citrobacter freundii or Citrobacter youngae   703003007
  • Citrobacter koseri or Citrobacter farmeri   703034006
  • Citrobacter species or Enterobacter cloacae   710325001
  • Citrobacter werkmanii or Citrobacter youngae   703012009
  • Clonorchis species or Opisthorchis species   788039000
  • Clostridium bolteae or Clostridium clostridioforme   725474003
  • Coccidioides immitis or Coccidioides posadasii   703020006
  • Comamonas acidovorans or Comamonas testosteroni   717201009
  • Corynebacterium afermentans or Corynebacterium coyleae   703239007
  • Corynebacterium amycolatum or Corynebacterium minutissimum   717345006
  • Corynebacterium amycolatum or Corynebacterium striatum   716808001
  • Corynebacterium amycolatum or Corynebacterium xerosis   771377004
  • Corynebacterium auris or Turicella otitidis   703237009
  • Corynebacterium glucuronolyticum or Corynebacterium riegelii   716262008
  • Corynebacterium mucifaciens or Corynebacterium ureicelerivorans   34731000087107
  • Corynebacterium pseudodiphtheriticum or Corynebacterium propinquum   715351002
  • Cryptococcus gattii or Cryptococcus neoformans   719059002
  • CSF: microorganisms - finding   365695008
  • Cutaneotrichosporon dermatis or Cutaneotrichosporon mucoides   34691000087104
  • Cyst of Entamoeba histolytica and trophozoite of Entamoeba histolytica   788340006
  • Debaryomyces hansenii or Pichia membranifaciens   787181005
  • Delftia acidovorans or Comamonas testosteroni   703242001
  • Dermacoccus nishinomiyaensis or Kytococcus sedentarius   702936000
  • Egg of Clonorchis sinensis or egg of Heterophyes species or egg of Metagonimus yokogawai or egg of Opisthorchis species   1231358009
  • Egg of Heterophyes heterophyes or egg of Metagonimus yokogawai   788342003
  • Enhydrobacter aerosaccus or Moraxella osloensis   37811000087101
  • Entamoeba dispar or Entamoeba histolytica trophozoite   719026000
  • Entamoeba histolytica or Entamoeba dispar cyst   711179005
  • Enterobacter cloacae or Enterobacter asburiae   703027009
  • Enterococcus casseliflavus or Enterococcus gallinarum   703032005
  • Enterococcus casseliflavus or Enterococcus mundtii   716261001
  • Enterococcus durans or Enterococcus hirae   702991007
  • Enteromonas hominis or Retortamonas intestinalis   703241008
  • Escherichia coli or Hafnia alvei   703010001
  • Escherichia coli serotype O151:H16 or O118:H16   122881000112102
  • Fasciolopsis buski or Fasciola hepatica   703235001
  • Fasciolopsis species or Fasciola species   710323008
  • Finding of presence of yeast cells and fungal elements   717159009
  • Fungus on microscopy   275802000
  • Fusarium proliferatum or Fusarium verticillioides   470561000124101
  • Fusobacterium naviforme or Fusobacterium nucleatum   44611000087109
  • Gemella morbillorum or Streptococcus acidominimus or Streptococcus pneumoniae   717203007
  • Gemella morbillorum or Streptococcus agalactiae or Streptococcus acidominimus   703011002
  • Gemella species or Streptococcus pneumoniae   717202002
  • Geobacillus thermodenitrificans or Geobacillus thermoglucosidasius   788135008
  • Geotrichum candidum or Geotrichum klebahnii   702997006
  • Geotrichum capitatum or Prototheca zopfii   703747008
  • Geotrichum capitatum or Prototheca zopfii or Pichia kudriavzevii   703746004
  • Haemophilus influenzae or Haemophilus parainfluenzae   470621000124106
  • Hippurate-negative Campylobacter jejuni or Campylobacter coli   1269473002
  • Histoplasma species or Ajellomyces species   712761004
  • Human coxsackievirus or human echovirus   703015006
  • Human parechovirus 1 or human parechovirus 2   703024002
  • Klebsiella oxytoca or Raoultella planticola or Raoultella terrigena   717204001
  • Klebsiella oxytoca or Raoultella species   44621000087101
  • Klebsiella pneumoniae or Klebsiella oxytoca   702938004
  • Klebsiella pneumoniae or Klebsiella variicola   44711000087101
  • Klebsiella pneumoniae subspecies pneumoniae or Raoultella planticola   787961005
  • Klebsiella pneumoniae subspecies pneumoniae or Raoultella planticola or Raoultella terrigena   717205000
  • Klebsiella species or Enterobacter species   711178002
  • Kluyvera ascorbata or Kluyvera cryocrescens   717206004
  • Kocuria arsenatis or Kocuria rhizophila   35131000087109
  • Kocuria varians or Kocuria rosea   703059002
  • Lacticaseibacillus casei or Lacticaseibacillus paracasei   787892008
  • Lacticaseibacillus casei or Lacticaseibacillus paracasei or Lacticaseibacillus rhamnosus   34741000087101
  • Lactiplantibacillus paraplantarum or Lactiplantibacillus pentosus or Lactiplantibacillus plantarum   34751000087103
  • Lactobacillus acidophilus or Lactobacillus gasseri   38841000087101
  • Leifsonia aquatica or Microbacterium species   720965005
  • Leishmania chagasi or Leishmania infantum   470631000124109
  • Lysinibacillus fusiformis or Lysinibacillus sphaericus   787894009
  • Malassezia furfur or Malassezia pachydermatis   717207008
  • Mannheimia haemolytica or Bibersteinia trehalosi   703261002
  • Micrococcus luteus or Micrococcus lylae   703005000
  • Mycobacterium africanum or Mycobacterium pinnipedii   785924000
  • Mycobacterium angelicum or Mycobacterium szulgai   716816005
  • Mycobacterium chimaera or Mycobacterium intracellulare   785913002  removed: 2021-09-30
  • Mycobacterium fortuitum or Mycobacterium peregrinum   703026000
  • Mycobacterium gastri or Mycobacterium kansasii   44671000087102
  • Mycobacterium lacticola or Mycobacterium neoaurum   716813002
  • Mycobacterium mucogenicum or Mycobacterium phocaicum   716812007
  • Mycobacterium senegalense or Mycobacterium conceptionense   702993005
  • Mycobacterium tuberculosis or Mycobacterium canettii   703057000
  • Mycobacterium xenopi or Mycobacterium celatum   702999009
  • Mycobacteroides abscessus or Mycobacteroides chelonae   786840007
  • Mycoplasma species or Ureaplasma urealyticum   720608006
  • Myroides odoratimimus or Myroides odoratus   716820009
  • Necator species or Ancylostoma species   710321005
  • Neisseria animaloris or Neisseria zoodegmatis   716260000
  • Neisseria cinerea or Neisseria gonorrhoeae   470641000124104
  • Neisseria flava or Neisseria perflava or Neisseria subflava   112921000112103
  • Neisseria flavescens or Neisseria subflava   787893003
  • Neisseria meningitidis serogroup B or Escherichia coli K1   717208003
  • Neisseria meningitidis serogroup Y or Neisseria meningitidis serogroup W135   717209006
  • Neisseria mucosa or Neisseria sicca   112941000112107
  • Neisseria sicca or Neisseria subflava   702990008
  • Neisseria weaveri or Neisseria elongata   703002002
  • No parasites isolated   168223003
  • Nocardia abscessus complex or Nocardia exalbida   716823006
  • Nocardia abscessus or Nocardia arthritidis   703007008
  • Nocardia africana or Nocardia nova   34661000087107
  • Normal flora   23506009
  • Organism unidentified, referred to CDC   414976005
  • Organism unidentified, referred to reference laboratory for identification   414977001
  • Paenibacillus pabuli or Paenibacillus polymyxa   787959001
  • Papiliotrema laurentii or Rhodotorula glutinis or Rhodotorula mucilaginosa   788133001
  • Pasteurella haemolytica or Rodentibacter pneumotropicus   703006004
  • Pichia kudriavzevii or Candida inconspicua   703722006
  • Pichia kudriavzevii or Candida inconspicua or Candida lambica   703860006
  • Plasmodium ovale or Plasmodium vivax   786826006
  • Plasmodium species - unable to speciate   404525009
  • Plasmodium species not Plasmodium falciparum   404526005
  • Porphyromonas asaccharolytica or Porphyromonas uenonis   34671000087103
  • Porphyromonas asaccharolytica or Prevotella melaninogenica   718748007
  • Presence of bacteria - finding   365691004
  • Presence of fungal elements - finding   365692006
  • Presence of ova cysts and parasites - finding   365694007
  • Prevotella buccalis or Prevotella oralis   703060007
  • Prevotella buccalis or Prevotella veroralis   703036008
  • Prevotella loescheii or Prevotella denticola   703029007
  • Prevotella nigrescens or Prevotella intermedia   702988007
  • Prevotella oris or Prevotella buccae   703008003
  • Proteus mirabilis or Proteus penneri   703229001
  • Proteus vulgaris or Proteus penneri   703021005
  • Providencia alcalifaciens or Providencia rustigianii   702994004
  • Pseudomonas acidovorans or Pseudomonas testosteroni   717210001
  • Pseudomonas alcaligenes or Pseudomonas pseudoalcaligenes   717211002
  • Pseudomonas fluorescens or Pseudomonas putida   703240009
  • Pseudomonas fluorescens or Pseudomonas putida or Pseudomonas mendocina   703014005
  • Pseudomonas stutzeri or Pseudomonas mendocina   703000005
  • Ralstonia mannitolilytica or Ralstonia pickettii   786993009
  • Raoultella ornithinolytica or Raoultella planticola   787958009
  • Rhodotorula glutinis or Rhodotorula mucilaginosa   703262009
  • Saccharomyces cerevisiae or Saccharomyces cerevisiae cerevisiae   470541000124100
  • Salmonella Ebrie or Salmonella Monschaui   10261000112105
  • Salmonella enterica subsp. arizonae or Salmonella enterica subsp. diarizonae   34681000087101
  • Salmonella Tornow or Salmonella Apapa   785862003
  • Sample no virus identified   168209000
  • Serratia marcescens or Serratia ureilytica   1004000003
  • Shewanella algae or Shewanella putrefaciens   702986006
  • Shigella boydii or Shigella flexneri   702989004
  • Sphingobacterium multivorum or Sphingobacterium spiritivorum   717212009
  • Sphingobacterium multivorum or Sphingobacterium thalpophilum   716825004
  • Staphylococcus aureus or Staphylococcus intermedius   702939007
  • Staphylococcus chromogenes or Staphylococcus hyicus   716259005
  • Staphylococcus intermedius or Staphylococcus pseudintermedius   785863008
  • Staphylococcus pseudintermedius or Staphylococcus delphini   715352009
  • Staphylococcus saprophyticus or Staphylococcus hominis   702995003
  • Staphylococcus warneri or Staphylococcus pasteuri   702996002
  • Streptococcus acidominimus or Streptococcus pneumoniae   787891001
  • Streptococcus acidominimus or Streptococcus pneumoniae or Streptococcus morbillorum   703018008  removed: 2021-09-30
  • Streptococcus anginosus or Streptococcus dysgalactiae   787889009
  • Streptococcus anginosus or Streptococcus dysgalactiae subspecies dysgalactiae   703238004
  • Streptococcus anginosus or Streptococcus dysgalactiae subspecies equisimilis   717213004
  • Streptococcus anginosus or Streptococcus intermedius   703855007
  • Streptococcus constellatus or Streptococcus anginosus   703023008
  • Streptococcus dysgalactiae Lancefield group C or Streptococcus dysgalactiae Lancefield group G   33871000087104
  • Streptococcus dysgalactiae subspecies dysgalactiae or Streptococcus dysgalactiae subspecies equisimilis or Streptococcus group G   717214005
  • Streptococcus equi or Streptococcus dysgalactiae subspecies equisimilis   712763001
  • Streptococcus Lancefield group C or Streptococcus Lancefield group G   641000112101
  • Streptococcus lutetiensis or Streptococcus bovis   703227004
  • Streptococcus mitis or Streptococcus oralis   703001009
  • Streptococcus mitis or Streptococcus oralis or Streptococcus pneumoniae   787890000
  • Streptococcus morbillorum or Streptococcus agalactiae or Streptococcus acidominimus   703055008  removed: 2021-09-30
  • Streptococcus pneumoniae or Streptococcus viridans group   717216007
  • Streptococcus salivarius or Streptococcus vestibularis   33341000087102
  • Streptococcus sanguinis or Streptococcus gordonii   702987002
  • Streptococcus species or Enterococcus species   710329007
  • Trichophyton mentagrophytes or Trichophyton rubrum   787182003
  • Trichosporon beigelii or Trichosporon cutaneum   703025001
  • Trypanosoma brucei gambiense or Trypanosoma brucei rhodesiense   703016007
  • Urine culture: organisms - finding   365697000
  • Vibrio fluvialis or Vibrio furnissii   703004001
  • Vibrio parahaemolyticus or Vibrio alginolyticus   712766009
  • Weeksella virosa or Empedobacter brevis   702998001
  • Yeast detected   769070007
  • Yersinia enterocolitica or Yersinia frederiksenii or Yersinia intermedia   717217003
  • Yersinia frederiksenii or Yersinia intermedia   703037004
hierarchies
a selection of possible paths
SNOMED CT Concept   138875005
  Clinical finding   404684003
    Procedure related finding   127325009
      Evaluation finding   441742003
        Presence of organism - finding   365690003

ancestors
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