Human coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection   88891-7

LOINC Code


LOINC code88891-7
nameHuman coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection
descriptionThis assay detects nucleic acid sequences from Coronavirus subtypes 229E, HKU1, OC43, and NL63 RNA in nasopharyngeal swabs using PCR and non-probe detection methods, such as melt curve analysis. A single Coronavirus result is reported when any of the four Coronavirus subtypes are detected. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel EZ assay.
statusACTIVE

Fully-Specified Name

componentHuman coronavirus 229E+HKU1+NL63+OC43 RNA
propertyPrThr  =  Present or threshold:  The Property PrThr stands for “Presence or Threshold”, meaning either a) the actual presence or absence of an analyte, or b) that the amount of analyte detected is over some predetermined threshold.
timePt  =  Point in time:  To identify measures at a point in time. This is a synonym for “spot” or “random” as applied to urine measurements.
systemNph  =  Naspopharynx
scaleOrd  =  Ordinal:  Ordered categorical responses, e.g., 1+, 2+, 3+; positive, negative; reactive, indeterminate, nonreactive.
methodNon-probe.amp.tar

Additional Names

short nameHCoV 229E+HKU1+NL63+OC43 Np Ql NAA+nonpr

Basic Attributes

classMICRO
type1  Laboratory
order vs. observationBoth

Associated Observations

LOINC codes that represent optional associated observation(s) for a clinical observation or laboratory test. A LOINC term may represent a single associated observation or panel containing several associated observations.

Member of these Groups

LG32771-4Human coronavirus
LG50873-5Human coronavirus 229E+HKU1+NL63+OC43 RNA|PrThr|Sys:ANYResp

Member of these Panels

82159-5Respiratory pathogens DNA and RNA panel - Nasopharynx by NAA with non-probe detection

History/Usage

first released
last updated2.66
last change typeNAM  - change to Analyte/Component
change reasonUpdated order of analytes in Component from Human coronavirus 229E+HKU1+OC43+NL63 RNA for consistency across terms.

Related Names

3 Self-Sustaining Sequence Replication
3SR SR
Amplif
Amplification
Amplified
Corona virus
CoV 229E+HKU1+NL63+OC43
DNA NUCLEIC ACID PROBE
DNA probe
HCoV
HCoV 229E
HCoV 229E+HKU1+NL63+OC43
ID
Infectious Disease
InfectiousDisease
LAT
LCR
Ligase chain reaction
Ligation-activated transcription
Microbiology
NAA+non-probe
NAA+probe
NAAT
NASBA
Nasopharynx
Nucleic acid sequence based analysis
Ordinal
PCR
Point in time
Polymerase chain reaction
PR
Probe amp
Probe with ampification
Probe with target amplification
QBR
QL
Qual
Qualitative
Random
Ribonucleic acid
Screen
SDA
Strand Displacement Amplification
TMA
Transcription mediated amplification

Copyright © 2023 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © 1995-2023, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.

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